RetrogeneDB ID: | retro_itri_276 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393281.1:33397539..33398368(-) | ||
Located in intron of: | ENSSTOG00000022493 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSSTOG00000011327 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 94.58 % |
Parental protein coverage: | 87.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MPREDRATWKSNYF.KIIQLLDDYPKCFIVGADNVGSKQMQQ.RMSLRGKAVVLMG.NTMMRKAIRGHLE | |
Retrocopy | MPREDRATWKSNYFHKIIQLLDDYPKCFIVGADNVGSKQMQQFRMSLRGKAVVLMGENTMMRKAIRGHLE |
Parental | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
NNPALEKLLP.IRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGP.KTSFFQA | |
Retrocopy | NNPALEKLLPYIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPKKTSFFQA |
Parental | LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEET |
LGITTKISRGTIEILSDV.LIKT.DKVGASEATLLNMLNISPFSFGLI.QQVF.NGSIYNPEVLDITEET | |
Retrocopy | LGITTKISRGTIEILSDV*LIKTRDKVGASEATLLNMLNISPFSFGLIMQQVFANGSIYNPEVLDITEET |
Parental | LHSRFLEGVRNVASVCLQI-GYPTVASVPHSIINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFV |
LHSRFLEGVRNVASVCLQI..Y.TVASVPHSI.NGYKRVLALSVETEYTFP.AEKVKAFLADPSA.V | |
Retrocopy | LHSRFLEGVRNVASVCLQI>SYLTVASVPHSIVNGYKRVLALSVETEYTFPFAEKVKAFLADPSAIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |