RetrogeneDB ID: | retro_tsyr_1133 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_317709:745..1190(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSTSYG00000009732 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 67.95 % |
Parental protein coverage: | 51.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLE-GVRNVASVCLQIGY |
T.DKV...EATLLN.LNIS.FSFGLIIQQVFD.G.IYNPEVLD.TE.T..S.F.E.GV..VAS.CLQIGY | |
Retrocopy | TEDKVEVNEATLLNTLNISLFSFGLIIQQVFDHGNIYNPEVLDLTEETAFS-FPE>GVHHVASICLQIGY |
Parental | PTVASVPHSIINGYKRVLALSVETEYTFPLAXXVKAFLADPSAFVAAAPVAAAAPAAPAALAAPAKVEAK |
PTVASVPHS.I..YKRVLALSVE...TFPLA..VK.FLA..SAFV.AA....AA.AA.AALA.....E.. | |
Retrocopy | PTVASVPHSVISRYKRVLALSVEADDTFPLAEKVKVFLANLSAFVTAA---TAAFAATAALAKDEAKEEL |
Parental | EESEESDEDMGFGLFD |
EE......DMGF.LFD | |
Retrocopy | EELDK---DMGFVLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |