RetrogeneDB ID: | retro_tsyr_1429 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_437377:11..489(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSTSYG00000009732 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 60. % |
Parental protein coverage: | 54.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AQNTGL-GP-EKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQV |
.QN.GL.GP....S..Q.......I.R.....L.DVQLIK.GD.VGA.EATL...LNISP.S.GLIIQQ. | |
Retrocopy | SQNAGL<GP<KMSSVVQTWAASLIICRDAMVSLCDVQLIKSGDMVGACEATL---LNISPGSLGLIIQQA |
Parental | FDNGSIYNPEVLDITEDTLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLA |
F..GSIYNP.VL.I...T..S.FLEGVRNVA.VCLQ.G.P..A..PHS.INGYKRVLALSVET.....LA | |
Retrocopy | FVSGSIYNPKVLAIMVVTQPSHFLEGVRNVANVCLQTGHPKAAAAPHSVINGYKRVLALSVETDCNSLLA |
Parental | XXVKAFLADPSAFVAAAPVAAAAPA |
..VKAFLADPSA.VA.....A...A | |
Retrocopy | EKVKAFLADPSAVVATTAAPARVEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |