RetrogeneDB ID: | retro_mputfur_910 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896970.1:5857365..5858312(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSMPUG00000003055 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 78.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
.PREDR.TWKSNYFLK.IQLLD.YPKCFIVGADN..SKQMQQ...SL.G..V.LMGKNTMM..AI.GHLE | |
Retrocopy | IPREDRVTWKSNYFLKNIQLLDYYPKCFIVGADNMSSKQMQQVSRSLCGNDVLLMGKNTMMCNAI*GHLE |
Parental | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
.NP.LEKLLPHI..NVGF.FTK.DLTEIRDM.LANK.P.A..AGAIAP.EVTVPAQNTGLGPEKT..FQA | |
Retrocopy | KNPDLEKLLPHIWENVGFLFTKVDLTEIRDMMLANKMPGATHAGAIAPSEVTVPAQNTGLGPEKTYLFQA |
Parental | LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQ-QVFDNGSIY-NPEVLDITE |
LGITTKI..GT.EILSD.Q.IKTGD.V.AS..TL.NMLN.SPF.FGLII..QVF..G.IY.NPEVLDI.E | |
Retrocopy | LGITTKIPIGTTEILSDAQVIKTGDQVRASKTTLMNMLNTSPF-FGLIIS<QVFGKGRIY>NPEVLDIME |
Parental | ETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT-FPLAEKVKAFLADPSAFVA |
ETL.S.FL.GV.NVAS.CLQ.GY..V.SVPHSIIN.Y..VLALSVETDYT..PLAEKVKAFLADPSAFVA | |
Retrocopy | ETLLSHFLKGVCNVASICLQVGYQAVPSVPHSIINAYEQVLALSVETDYT<LPLAEKVKAFLADPSAFVA |
Parental | AAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD |
AAP.AA.TTAAPAA.AAPAK.EA.EESEESD.DMGFGLFD | |
Retrocopy | AAPMAAGTTAAPAATAAPAKAEAQEESEESDNDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |