RetrogeneDB ID: | retro_tsyr_727 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_18306:9611..10508(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSTSYG00000009732 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 80.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF |
QLLDDYPKCF.VGADNVGSKQMQQIRMSLRGKAVVLMG.NTMM..AIRGHLENN..LEKLLPHIRG..GF | |
Retrocopy | QLLDDYPKCFTVGADNVGSKQMQQIRMSLRGKAVVLMGENTMMLEAIRGHLENNLVLEKLLPHIRGIIGF |
Parental | VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDV |
VFTKE.LTEIRDMLLAN.VPAAA.AGA.AP..VTVPAQ.TG..PEKTSFFQA.GIT.K.SRGT.EILSDV | |
Retrocopy | VFTKEYLTEIRDMLLANRVPAAAGAGATAPRKVTVPAQSTGVRPEKTSFFQASGITSKTSRGTTEILSDV |
Parental | QLIKTGDKVGASEATLLNMLNISPFSFGLIIQQV-FDNGSIYNPEVLDITEDTLHSRFLEGVRNVASVCL |
QLIKTGDKV.ASEATLLN..NISPFSFGLIIQQ..F..GSIY.PEVLDITE.TLHSRFLEGV..VAS.CL | |
Retrocopy | QLIKTGDKVRASEATLLNLRNISPFSFGLIIQQI<FHHGSIYSPEVLDITEETLHSRFLEGVCHVASDCL |
Parental | Q-IGYPTVASVPHSIINGYKRVLALSVETEYTFPLAXXVKAFLADPSAFVAAAPVAAAAPAAPAALAAPA |
Q.IG.PTVAS.PHS.I.GY.RVLALSVE...T.PLA..VKAFLADPSA.V...P..AAA.AAPAA..APA | |
Retrocopy | Q>IGDPTVASDPHSLISGYTRVLALSVEPDDTCPLAEKVKAFLADPSASVVVGPLTAAAAAAPAAPVAPA |
Parental | KVEAKEESEESDEDMGFGLFD |
K.EAKEE.EES.E..GFGLFD | |
Retrocopy | KDEAKEELEESVEEEGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |