RetrogeneDB ID: | retro_vpac_45 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1193:2132215..2132863(-) | ||
Located in intron of: | ENSVPAG00000002278 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSVPAG00000012156 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 94.47 % |
Parental protein coverage: | 68.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPREDRATWNSNYFLNIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MPREDRATW.SNYFL.IIQLLDDYPK.FIVGADNVGSK.MQQIRMSLR.KAVVLMGKNTMM.KAIRGHLE | |
Retrocopy | MPREDRATWKSNYFLKIIQLLDDYPKRFIVGADNVGSK*MQQIRMSLRWKAVVLMGKNTMMCKAIRGHLE |
Parental | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
NNPALEKLLPHIRGN.GFVFTKEDLTEIRDMLLANKVPAAARA.AIAPCEVTVPAQNTGLGP.KTSFFQA | |
Retrocopy | NNPALEKLLPHIRGNMGFVFTKEDLTEIRDMLLANKVPAAARASAIAPCEVTVPAQNTGLGP-KTSFFQA |
Parental | LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEET |
LGITTKISRGT.EILSDVQLIKTGDK.GASEATLLNMLNISPFS.GLIIQQVFDNGSIYNPEVLDITEET | |
Retrocopy | LGITTKISRGTTEILSDVQLIKTGDKEGASEATLLNMLNISPFSSGLIIQQVFDNGSIYNPEVLDITEET |
Parental | LHSRFLE |
LHSRFLE | |
Retrocopy | LHSRFLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |