RetrogeneDB ID: | retro_tsyr_1892 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_64225:4714..5166(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSTSYG00000000845 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 78.85 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTL.GKTIT..VE..D.IENVKAKIQDKEGIPP.Q.RL.FAGKQL.DGR.LSDYNIQ.ESTLHLV | |
Retrocopy | MQIFVKTLMGKTITPNVETLDRIENVKAKIQDKEGIPPEQERLTFAGKQLKDGRNLSDYNIQEESTLHLV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKI-SRLRRECPSDECGAGVFMASHFDRH |
LRL.GG..KR.KK.Y.TP.KNKHKRKKVKLA.LK...V.ENG.I..RLR.ECPSDECGA..FMASHFDRH | |
Retrocopy | LRLYGGTNKR-KKCYITPNKNKHKRKKVKLAFLK---VNENGRI<CRLRQECPSDECGAEIFMASHFDRH |
Parental | YCGKCCLTYCFNKPEE |
Y..KCCLTYCFNKPE. | |
Retrocopy | YYDKCCLTYCFNKPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004017 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000023471 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000010052 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000007678 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000023133 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017064 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000029449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015563 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000001819 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003613 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011928 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016471 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000004426 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009566 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000845 | 14 retrocopies |