RetrogeneDB ID: | retro_tsyr_1950 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_71332:9387..9842(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSTSYG00000000845 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 77.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MQIFVKTLTG-KTITLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH |
MQIFVKTLTG.KTITLEVE...D.IE.VKAKIQDKEGIPPDQQR.IF.GKQ.EDGRTLS.YNIQ.ESTLH | |
Retrocopy | MQIFVKTLTG<KTITLEVESL<DPIEQVKAKIQDKEGIPPDQQRCIFVGKQQEDGRTLSHYNIQNESTLH |
Parental | LVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMAS-HFD |
LVL.L.GGAKKR.KKSY.T.KKNKHKRKKVKL...KY.KV.EN.KIS.L..E.PSDE.GA.VF.AS.HFD | |
Retrocopy | LVLILHGGAKKR-KKSYITSKKNKHKRKKVKL---KYCKVNENDKISHLH*EYPSDE*GAEVFIAS>HFD |
Parental | RHYCGKCCLTYCFNKPEEK |
RHYCGKC.L.Y.F.KPE.K | |
Retrocopy | RHYCGKCYLNYYFSKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004017 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000023471 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000010052 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000007678 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000023133 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017064 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000029449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015563 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000001819 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003613 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011928 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016471 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000004426 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009566 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000845 | 14 retrocopies |