RetrogeneDB ID:

retro_tsyr_339

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_979:19417..19666(-)
Located in intron of:ENSTSYG00000008927
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS27A
Ensembl ID:ENSTSYG00000000845
Aliases:None
Description:ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]


Retrocopy-Parental alignment summary:






>retro_tsyr_339
ATGCAGATTTCCATGAAAACCCTTATGGGGAAGACCACCACTCTCGAAGTTGAACCCTTGGATACAATAGAAACTGTAAA
GGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAC
ATACTCTGTCTGACTACAACATTCACAAGAAGTCTACTCTTCATCTTGTGTTGAGACTTTGTGGTGGTGCTAAGAAAAGG
AAGAAGAAA

ORF - retro_tsyr_339 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.95 %
Parental protein coverage: 53.21 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
MQI..KTL.GKT.TLEVEP.DTIE.VKAKIQDKEGIPPDQQRLIFAGKQLEDG.TLSDYNI.K.STLHLV
RetrocopyMQISMKTLMGKTTTLEVEPLDTIETVKAKIQDKEGIPPDQQRLIFAGKQLEDGHTLSDYNIHKKSTLHLV
ParentalLRLRGGAKKRKKK
LRL.GGAKKRKKK
RetrocopyLRLCGGAKKRKKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_339 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 82 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000040175 retrocopies
Canis familiaris ENSCAFG000000234713 retrocopies
Callithrix jacchus ENSCJAG000000100525 retrocopies
Gorilla gorilla ENSGGOG000000076789 retrocopies
Loxodonta africana ENSLAFG000000231332 retrocopies
Myotis lucifugus ENSMLUG0000001706410 retrocopies
Myotis lucifugus ENSMLUG000000294491 retrocopy
Macaca mulatta ENSMMUG000000155638 retrocopies
Monodelphis domestica ENSMODG000000018193 retrocopies
Oryctolagus cuniculus ENSOCUG0000000361310 retrocopies
Pongo abelii ENSPPYG000000258711 retrocopy
Pan troglodytes ENSPTRG000000119281 retrocopy
Pteropus vampyrus ENSPVAG000000164713 retrocopies
Rattus norvegicus ENSRNOG000000044262 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000095665 retrocopies
Tarsius syrichta ENSTSYG00000000845 14 retrocopies



Copyright © RetrogeneDB 2014-2017