RetrogeneDB ID: | retro_mmur_1229 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_34441:681..1382(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSMICG00000016606 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 94.04 % |
Parental protein coverage: | 88.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLKRVAAPKHWMLDKLTGVF.P.PSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM.RFI | |
Retrocopy | MARGPKKHLKRVAAPKHWMLDKLTGVFVPPPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM*RFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDITYPAGFMDVISIDKTGENF.LIYDTKG.FAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKVRTDITYPAGFMDVISIDKTGENFCLIYDTKGHFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGG.NLGRI.VITNRERHPGSFDVVHV | |
Retrocopy | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGTNLGRIDVITNRERHPGSFDVVHV |
Parental | KDANGNSFATR-LSNIFVIGKGNKP |
KDANGNSFAT..LS....IGKG.KP | |
Retrocopy | KDANGNSFATH<LSTFSIIGKGKKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |