RetrogeneDB ID: | retro_sscr_973 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:91625098..91625885(+) | ||
Located in intron of: | ENSSSCG00000009053 | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000027137 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4 | ||
Ensembl ID: | ENSSSCG00000012405 | ||
Aliases: | RPS4, Rps4x | ||
Description: | Sus scrofa ribosomal protein S4 (RPS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001204283] |
Percent Identity: | 85.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHL..VAAPK.WMLDK.TGVFAP.PSTGPHKLRECLPLIIFLRNRLK.AL.GDE.K..CMQ.FI | |
Retrocopy | MARGPKKHLNHVAAPKPWMLDKPTGVFAPHPSTGPHKLRECLPLIIFLRNRLKCALIGDEIK-VCMQCFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKV.TDITYPAGFM..I.IDKTGENF.LI.DTKG.FA.H.ITPEEAKYK.CK.RKIFVGTK.IPHLV | |
Retrocopy | KIDGKVHTDITYPAGFMNAIHIDKTGENFCLICDTKGHFALHCITPEEAKYKCCKGRKIFVGTKEIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVT-GGANLGRIGVITNRERHPGSFDVVH |
THDARTIRYPDPLIK.NDTI.IDLETGKITDFIKFDTGNLCMVT.GGA..GRIGVIT.RER.PGSF.VVH | |
Retrocopy | THDARTIRYPDPLIKGNDTIRIDLETGKITDFIKFDTGNLCMVT>GGAKRGRIGVITSRERLPGSFNVVH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VK.ANGNSFAT.LSN.FVI.KGNKPWISLPRGKGI.LTIAE..DKRLAAK.SSG | |
Retrocopy | VKGANGNSFATQLSNTFVIVKGNKPWISLPRGKGIHLTIAEGKDKRLAAKGSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 834 .21 RPM |
SRP014902_testis | 0 .14 RPM | 1531 .16 RPM |
SRP018288_heart | 0 .03 RPM | 637 .58 RPM |
SRP018288_kidney | 0 .00 RPM | 529 .37 RPM |
SRP018288_liver | 0 .00 RPM | 421 .52 RPM |
SRP018288_lung | 0 .00 RPM | 614 .32 RPM |
SRP018856_adipose | 0 .00 RPM | 2208 .15 RPM |
SRP035408_brain | 0 .06 RPM | 504 .45 RPM |
SRP035408_liver | 0 .00 RPM | 514 .78 RPM |