RetrogeneDB ID: | retro_sscr_580 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 17:28708140..28708569(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4 | ||
Ensembl ID: | ENSSSCG00000012405 | ||
Aliases: | RPS4, Rps4x | ||
Description: | Sus scrofa ribosomal protein S4 (RPS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001204283] |
Percent Identity: | 81.82 % |
Parental protein coverage: | 54.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GP.K.LK.VAAPKHWMLDKLTG.FAP.PST.P.KLRECLPLIIFLR.RLK.A..G.EVK.ICM.RFI | |
Retrocopy | MAHGPQKYLKHVAAPKHWMLDKLTGIFAPCPSTRPYKLRECLPLIIFLRHRLKGAIIGEEVKEICMPRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKV.TDITYPAGFMDV.SI.KTGE.F.LIYDTKG.FA.HRITPEEAKYKLCKV.KIF.G..GIPHLV | |
Retrocopy | KIDGKVCTDITYPAGFMDVVSINKTGEDFCLIYDTKGCFAIHRITPEEAKYKLCKVGKIFMGIQGIPHLV |
Parental | THD |
THD | |
Retrocopy | THD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 834 .21 RPM |
SRP014902_testis | 0 .00 RPM | 1531 .16 RPM |
SRP018288_heart | 0 .00 RPM | 637 .58 RPM |
SRP018288_kidney | 0 .00 RPM | 529 .37 RPM |
SRP018288_liver | 0 .00 RPM | 421 .52 RPM |
SRP018288_lung | 0 .00 RPM | 614 .32 RPM |
SRP018856_adipose | 0 .00 RPM | 2208 .15 RPM |
SRP035408_brain | 0 .00 RPM | 504 .45 RPM |
SRP035408_liver | 0 .00 RPM | 514 .78 RPM |