Parental gene:

HMGB1, ENSCJAG00000021615

Aliases:LOC100392312, HMG-1, HMGB1
Description:High mobility group protein B1 [Source:UniProtKB/Swiss-Prot;Acc:B0CM99]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:143535243..143677452(-)


>ENSCJAG00000021615
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTCGGGAGGAGCA
TAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAGAAAGGAAAATTTGAAGATATGGCAAAGGCGGATAAGGCCCGTTATGAGAGGGAAATGAAAACCTATATTCCT
CCTAAAGGGGAGACAAAAAAGAAATTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCCTGTTCTGCTC
TGAGTATCGCCCAAAAATTAAAGGAGAACATCCTGGCCTGTCCATTGGTGATGTTGCGAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCCGCGAAGCTGAAGGAAAAATATGAAAAGGATATTGCT
GCATATCGAGCTAAAGGAAAGCCTGATGCAGCCAAAAAGGGAGTTGTCAAGGCTGAAAAAAGCAAGAAAAAGAAGGAAGA
GGAGGAAGATGAGGAAGATGAAGAGGATGAGGAGGAAGAGGAAGATGAAGAAGATGAAGATGAAGAAGAAGATGATGATG
ATGAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 49 .62 RPM
SRP051959_skeletal_muscle 30 .38 RPM
SRP051959_lymph_node 40 .20 RPM
SRP051959_lung 50 .20 RPM
SRP051959_liver 35 .72 RPM
SRP051959_kidney 49 .70 RPM
SRP051959_heart 41 .15 RPM
SRP051959_colon 50 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008880 possible_ortholog 7 retrogenes
Bos taurus ENSBTAG00000018103 ortholog_one2one 2 retrogenes
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
Choloepus hoffmanni ENSCHOG00000002423 possible_ortholog 16 retrogenes
Callithrix jacchus ENSCJAG00000003936 other_paralog 9 retrogenes
Callithrix jacchus ENSCJAG00000005112 other_paralog 2 retrogenes
Cavia porcellus ENSCPOG00000003985 possible_ortholog 1 retrogene
Echinops telfairi ENSETEG00000004048 ortholog_one2many 18 retrogenes
Homo sapiens ENSG00000189403 ortholog_one2many 37 retrogenes
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
Loxodonta africana ENSLAFG00000000269 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000025979 ortholog_one2one 17 retrogenes
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
Oryctolagus cuniculus ENSOCUG00000021335 possible_ortholog 16 retrogenes
Otolemur garnettii ENSOGAG00000003205 ortholog_one2one 104 retrogenes
retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
Sorex araneus ENSSARG00000004470 ortholog_one2many 14 retrogenes
Sarcophilus harrisii ENSSHAG00000014034 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000000443 ortholog_one2one 19 retrogenes
Tarsius syrichta ENSTSYG00000006328 possible_ortholog 7 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_718 84.09 60.93
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_895 57.01 98.14
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cjac_1042 84.96 52.56
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cjac_1546 66.85 80.93
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_cjac_1819 83.15 85.58
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_cjac_1842 75.00 83.26
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_cjac_1934 61.22 78.26
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_cjac_2269 71.57 91.63
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_cjac_2901 67.38 63.26
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_cjac_2934 72.99 96.74
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_cjac_3090 89.30 85.58
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSCJAG00000021615 retrocopies