RetrogeneDB ID: | retro_cjac_2900 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:78904568..78905128(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003936 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.02 % |
Parental protein coverage: | 92.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKG.PKKPKGKMSAYAFFVQTCREE.KKKNPEVPVNFAEFSKKCSERWKTMS.K.KSKFDEMAKADKV. | |
Retrocopy | MAKGNPKKPKGKMSAYAFFVQTCREELKKKNPEVPVNFAEFSKKCSERWKTMSRKDKSKFDEMAKADKVC |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSE-K |
YD.EMKDYGPAKG.KKK.DPNAPKRPPSGFFLFCSEF.PKIKSTNPGISIGDVAKKLG.MWNNLNDSE.K | |
Retrocopy | YDQEMKDYGPAKGCKKK*DPNAPKRPPSGFFLFCSEFHPKIKSTNPGISIGDVAKKLGKMWNNLNDSE<K |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEDD |
QP.ITKAAKLKEKYEKDVAD.K.KGKFDGAKGPAKVARKKVEEEDE.D | |
Retrocopy | QPSITKAAKLKEKYEKDVADCKLKGKFDGAKGPAKVARKKVEEEDEKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 8 .59 RPM |
SRP051959_heart | 0 .00 RPM | 3 .93 RPM |
SRP051959_kidney | 0 .00 RPM | 3 .28 RPM |
SRP051959_liver | 0 .00 RPM | 14 .25 RPM |
SRP051959_lung | 0 .00 RPM | 3 .42 RPM |
SRP051959_lymph_node | 0 .00 RPM | 5 .52 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 1 .73 RPM |
SRP051959_spleen | 0 .02 RPM | 6 .49 RPM |