Parental gene:

ENSECAG00000015757

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:11:51252960..51257451(-)


>ENSECAG00000015757
ATGAAGTTCAACCCCTTTGTGACTTCTGACCGGAGCAAGAACCGTAAACGGCATTTCAATGCACCTTCCCACATTCGTAG
GAAGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAATGTTCGGTCCATGCCCATCCGTAAGGATGATG
AAGTTCAGGTTGTACGAGGACACTATAAAGGGCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCATC
TACATTGAGCGAGTGCAGCGAGAGAAGGCTAATGGCACAACTGTGCATGTGGGCATTCACCCGAGCAAGGTGGTTATTAC
TAGACTAAAACTGGACAAAGACCGCAAAAAGATCCTTGAACGTAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCA
AATATAAGGAAGAAACAATTGAGAAAATGCAGGAATAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 227 .36 RPM
SRP021940_embryo 377 .38 RPM
SRP021940_cerebellum 126 .40 RPM
SRP021940_testis 106 .79 RPM
SRP021940_placental_villous 180 .90 RPM
SRP021940_articular_cartilage 232 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
retro_amel_1175, retro_amel_1535, retro_amel_1885, retro_amel_1934, retro_amel_360, retro_amel_499, retro_amel_900,
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
retro_btau_1090, retro_btau_230,
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Felis catus ENSFCAG00000011259 possible_ortholog 13 retrogenes
retro_fcat_1090, retro_fcat_1151, retro_fcat_1198, retro_fcat_1236, retro_fcat_1257, retro_fcat_1309, retro_fcat_1412, retro_fcat_1652, retro_fcat_1801, retro_fcat_1845, retro_fcat_1965, retro_fcat_497, retro_fcat_801,
Homo sapiens ENSG00000161970 possible_ortholog 27 retrogenes
retro_hsap_1137, retro_hsap_1309, retro_hsap_1376, retro_hsap_1394, retro_hsap_191, retro_hsap_2108, retro_hsap_2165, retro_hsap_2253, retro_hsap_253, retro_hsap_267, retro_hsap_2946, retro_hsap_3118, retro_hsap_3260, retro_hsap_3324, retro_hsap_3490, retro_hsap_3700, retro_hsap_3803, retro_hsap_3813, retro_hsap_3914, retro_hsap_4043, retro_hsap_4061, retro_hsap_4874, retro_hsap_4932, retro_hsap_642, retro_hsap_691, retro_hsap_915, retro_hsap_998,
Gorilla gorilla ENSGGOG00000023944 possible_ortholog 4 retrogenes
retro_ggor_2565, retro_ggor_270, retro_ggor_51, retro_ggor_974,
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
retro_mluc_232,
Macaca mulatta ENSMMUG00000003448 possible_ortholog 22 retrogenes
retro_mmul_1117, retro_mmul_1361, retro_mmul_1398, retro_mmul_1497, retro_mmul_1710, retro_mmul_1773, retro_mmul_1899, retro_mmul_1986, retro_mmul_2052, retro_mmul_2163, retro_mmul_2332, retro_mmul_2344, retro_mmul_325, retro_mmul_360, retro_mmul_398, retro_mmul_405, retro_mmul_448, retro_mmul_548, retro_mmul_805, retro_mmul_903, retro_mmul_920, retro_mmul_992,
Monodelphis domestica ENSMODG00000006201 ortholog_one2one 2 retrogenes
retro_mdom_36, retro_mdom_64,
Mustela putorius furo ENSMPUG00000007988 ortholog_one2one 12 retrogenes
retro_mputfur_1003, retro_mputfur_1146, retro_mputfur_1385, retro_mputfur_1428, retro_mputfur_1595, retro_mputfur_251, retro_mputfur_365, retro_mputfur_395, retro_mputfur_488, retro_mputfur_522, retro_mputfur_643, retro_mputfur_685,
Nomascus leucogenys ENSNLEG00000009981 ortholog_one2one 1 retrogene
retro_nleu_76,
Otolemur garnettii ENSOGAG00000017070 possible_ortholog 3 retrogenes
retro_ogar_118, retro_ogar_255, retro_ogar_66,
Pan troglodytes ENSPTRG00000008742 possible_ortholog 3 retrogenes
retro_ptro_1546, retro_ptro_2510, retro_ptro_73,
Rattus norvegicus ENSRNOG00000004214 possible_ortholog 3 retrogenes
retro_rnor_213, retro_rnor_260, retro_rnor_273,
Sarcophilus harrisii ENSSHAG00000006890 ortholog_one2one 1 retrogene
retro_shar_458,
Sus scrofa ENSSSCG00000028850 ortholog_one2one 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_429 76.76 96.55
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2. retro_ecab_473 68.42 77.93
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3. retro_ecab_515 67.11 100.00
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4. retro_ecab_609 97.24 100.00
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Download FASTA sequences of all ENSECAG00000015757 retrocopies