RetrogeneDB ID: | retro_fcat_1198 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:85891605..85891952(-) | ||
Located in intron of: | ENSFCAG00000008477 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 68.07 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSK-ELRQKYNVRSMPIRKDDEVQVVRGHYK-GQQIG |
MK.NPFVTSD.S.N.KRHF.APSHI.RK.MSSPLSK..LRQKYNV..MP...DD.VQVV..HY..GQQIG | |
Retrocopy | MKLNPFVTSDYSRNCKRHFSAPSHISRKSMSSPLSK<KLRQKYNVQPMPLQRDDKVQVV*RHYI>GQQIG |
Parental | KVVQVYRKKYVIYIERVQREK-ANGTTVHVGIHPSKVVITRLKLDKDRK |
KVVQ..RKKY..Y.E.VQ.E..ANGTT..VG.H.SKV.I.RL..DKD.. | |
Retrocopy | KVVQIHRKKYITYTE*VQWER<ANGTTIRVGTHTSKVLIGRLQVDKDSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 548 .68 RPM |
SRP017611_liver | 0 .00 RPM | 268 .19 RPM |