RetrogeneDB ID: | retro_ecab_609 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 23:39407772..39408207(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015757 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVT.DRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVV.GHYKGQQIGKV | |
Retrocopy | MKFNPFVTADRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVV*GHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQVYRKKYVIYIERVQREKANGTTVHVGIH.SKV.ITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI | |
Retrocopy | VQVYRKKYVIYIERVQREKANGTTVHVGIHLSKVAITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQE | |
Retrocopy | EKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 1 .83 RPM | 232 .11 RPM |
SRP021940_cerebellum | 0 .31 RPM | 126 .40 RPM |
SRP021940_embryo | 4 .81 RPM | 377 .38 RPM |
SRP021940_placental_villous | 1 .06 RPM | 180 .90 RPM |
SRP021940_synovial_membrane | 3 .13 RPM | 227 .36 RPM |
SRP021940_testis | 0 .96 RPM | 106 .79 RPM |