RetrogeneDB ID: | retro_fcat_1965 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:16348225..16348571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 74.14 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | HFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQ-IGKVVQVYRKKYVIYIERVQ |
HF.A.SHI.RKIMSSPLSK.LRQKYNV.SM.I.KDDE.QVV.GH.K.Q..IG...QVYRKK.VIYIERVQ | |
Retrocopy | HFHASSHICRKIMSSPLSKQLRQKYNVHSMFIWKDDEEQVVQGHCKSQK>IGNEIQVYRKKCVIYIERVQ |
Parental | REKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEK |
..K.NGTTVHV.IHPSKVVI.RLKLD.D.K.I.E.KAKS..VGK.K | |
Retrocopy | QDKVNGTTVHVDIHPSKVVIIRLKLDEDHKRIFEDKAKSC*VGKDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 548 .68 RPM |
SRP017611_liver | 0 .00 RPM | 268 .19 RPM |