RetrogeneDB ID: | retro_ecab_515 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 2:52888305..52888737(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015757 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKI-MSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQ-QIG |
.KFNPF.T.D..KN.K.HFN...H.RRKI..S..LSK.L.QKYNV.SM.I..D.EVQ...GH.KGQ.QIG | |
Retrocopy | IKFNPFIT*DH-KNCKHHFNTSLHRRRKI<TSAQLSKKLQQKYNVCSMSICTDNEVQMFQGHHKGQ>QIG |
Parental | KVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRK-KILERKAKSRQV-GKEKGKYK |
KVV.V.RKKY.IY...VQ..K.N..T.HV.IHPSKVVITRLKLDKD.K.KILE.KAKS.QV.GK.KGK.K | |
Retrocopy | KVVWVCRKKYIIYTKWVQCKKTNSKTIHVDIHPSKVVITRLKLDKDWK<KILEHKAKS*QV>GKKKGKCK |
Parental | EETIEKMQE |
EE.IEKMQ. | |
Retrocopy | EELIEKMQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 232 .11 RPM |
SRP021940_cerebellum | 0 .00 RPM | 126 .40 RPM |
SRP021940_embryo | 0 .00 RPM | 377 .38 RPM |
SRP021940_placental_villous | 0 .00 RPM | 180 .90 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 227 .36 RPM |
SRP021940_testis | 0 .00 RPM | 106 .79 RPM |