RetrogeneDB ID: | retro_ecab_429 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 18:30422302..30422720(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015757 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.76 % |
Parental protein coverage: | 96.55 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDE-VQVVRGHYKGQQIGKVVQVY |
F..SD..KN..RHFNAPSHI.RKIMS.PLSK.LRQKYNV.SM.I.KDD..VQVV.GHYKGQQIGKVVQ.Y | |
Retrocopy | FTSSDQNKNHERHFNAPSHICRKIMSFPLSKDLRQKYNV*SMSI*KDDK<VQVV*GHYKGQQIGKVVQIY |
Parental | RKKYVIYIERVQREK-ANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKM |
RKK.VIY.E.VQ.EK.AN.TTVHVG..PSKVV.TRLKL.KD.KKILE.K..S.QVGKEK.KYKEETIEKM | |
Retrocopy | RKKCVIYTELVQWEK<ANDTTVHVGMQPSKVVVTRLKLHKDGKKILEHKTNSCQVGKEKSKYKEETIEKM |
Parental | QE |
.E | |
Retrocopy | WE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 232 .11 RPM |
SRP021940_cerebellum | 0 .00 RPM | 126 .40 RPM |
SRP021940_embryo | 0 .05 RPM | 377 .38 RPM |
SRP021940_placental_villous | 0 .00 RPM | 180 .90 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 227 .36 RPM |
SRP021940_testis | 0 .00 RPM | 106 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2165 |
Macaca mulatta | retro_mmul_903 |
Sus scrofa | retro_sscr_485 |