RetrogeneDB ID: | retro_ecab_473 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 19:25035044..25035379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015757 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.42 % |
Parental protein coverage: | 77.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNP...S..S...KRHF..PSH......S.PLSK.LRQKYNV.SMPI.KD..VQ.V.GHYKGQQ.GKV | |
Retrocopy | MKFNPSIISN*SRSPKRHFDVPSHSHGRLLS-PLSKLLRQKYNVQSMPI*KDVVVQFV*GHYKGQQTGKV |
Parental | VQVY-RKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDK |
VQV..RK.YVI..E.VQ.EKAN.TT.H.GIHPSKVVITRLKL.K | |
Retrocopy | VQVT<RKIYVIHTE*VQQEKANDTTTHMGIHPSKVVITRLKLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 232 .11 RPM |
SRP021940_cerebellum | 0 .00 RPM | 126 .40 RPM |
SRP021940_embryo | 0 .00 RPM | 377 .38 RPM |
SRP021940_placental_villous | 0 .00 RPM | 180 .90 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 227 .36 RPM |
SRP021940_testis | 0 .06 RPM | 106 .79 RPM |