RetrogeneDB ID: | retro_fcat_1257 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:36500995..36501405(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 65.28 % |
Parental protein coverage: | 98.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
..FNPFVTSD.SKN..RH.N.PS.I..KIM.S.L.KEL.QKYNV..MPI.KDD..QV...H...Q..... | |
Retrocopy | INFNPFVTSDSSKNCNRHLNSPSYICSKIMFSALCKELIQKYNVLPMPI*KDDDIQVL*KHTNWQ----L |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKA-KSRQVGKEKGKYKEET |
VQV.RKKY.IYIE.VQRE...GT.VHVGIHPSKVVITRLKL....K..L..KA.KS.Q.GKEKGKYKE.T | |
Retrocopy | VQVCRKKYIIYIEQVQRETVDGTNVHVGIHPSKVVITRLKL--TAKRSLNVKA<KSHQMGKEKGKYKEAT |
Parental | IEKM |
IEK. | |
Retrocopy | IEKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 548 .68 RPM |
SRP017611_liver | 0 .00 RPM | 268 .19 RPM |