RetrogeneDB ID: | retro_fcat_1151 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:194956296..194956727(+) | ||
Located in intron of: | ENSFCAG00000027585 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 80.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNP.VTSDRSKNRKRHFNA.SHI.RKIMSS.LSKELRQKY..RSMPI.KDDEVQ.V.GHYKGQ.I.KV | |
Retrocopy | MKFNPLVTSDRSKNRKRHFNASSHIHRKIMSSLLSKELRQKYKFRSMPIQKDDEVQDV*GHYKGQEIEKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGI-HPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VQVY.KKY.IY.E.VQ.EKANGT.V.VGI.HPSKVVI.RLK.DKD.KKILE.KAKSRQVGKE.GK..E.T | |
Retrocopy | VQVYGKKYIIYTE*VQ*EKANGTPVQVGI<HPSKVVISRLKVDKDHKKILEHKAKSRQVGKENGKLEEAT |
Parental | IEKMQE |
.EK.QE | |
Retrocopy | -EKIQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .10 RPM | 548 .68 RPM |
SRP017611_liver | 0 .10 RPM | 268 .19 RPM |