RetrogeneDB ID: | retro_pabe_3387 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:25241712..25242171(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000019067 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 88.31 % |
Parental protein coverage: | 77.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | CREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNA |
CREEHKKKNPEVPVNFAEFSKKCS.RWKTMS.KEK.KF.EMAKAD.V...REMKDYGPAK.GKKK.DPNA | |
Retrocopy | CREEHKKKNPEVPVNFAEFSKKCSGRWKTMSRKEKFKFGEMAKADEVCCYREMKDYGPAK*GKKK-DPNA |
Parental | PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKS |
P.RPPS.FFLFCSEFRPKIKSTNP.ISIGDVAKKLGEMWNNLNDSEKQPY.TKAAKLKEKYEKDV.D.K. | |
Retrocopy | PRRPPSAFFLFCSEFRPKIKSTNPSISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKL |
Parental | KGKFDGAKGPAKVA |
KGKFDGAK.PAKVA | |
Retrocopy | KGKFDGAKRPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .33 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .61 RPM | 11 .19 RPM |
SRP007412_heart | 0 .06 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .40 RPM | 14 .02 RPM |
SRP007412_liver | 0 .09 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4251 |
Pan troglodytes | retro_ptro_2891 |
Macaca mulatta | retro_mmul_1143 |