RetrogeneDB ID: | retro_pabe_2339 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:121019204..121019775(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 63.08 % |
Parental protein coverage: | 96.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGD.K.PKGKMSA..FFV.T.REEHKK..P..PV.F....K....R.....GKEK..........K.. | |
Retrocopy | MAKGDLKNPKGKMSANVFFVKTRREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINLIKSQRWIKYA |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAK-KL-GEMWN-NLNDS |
.D.EMKDY.PAKG.KKKK.P.A...PPS.FFLFCSEF.PKIKS..PG.S..DV.K.KL.GEMWN..L.DS | |
Retrocopy | -DWEMKDYDPAKGHKKKKIPKAC*SPPSEFFLFCSEFYPKIKSPKPGVSVKDVTK<KLLGEMWN<CLSDS |
Parental | EKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEE |
EKQ..ITKA.KLKEKYEKDVAD.KSKGKFD..K.P..VA.KKVEE..E..EEEEE | |
Retrocopy | EKQSCITKAVKLKEKYEKDVADFKSKGKFDAQKAPLTVAWKKVEEDKEDKEEEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2621 |
Pan troglodytes | retro_ptro_1766 |
Gorilla gorilla | retro_ggor_1834 |
Macaca mulatta | retro_mmul_1482 |