RetrogeneDB ID: | retro_pabe_2538 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:98237686..98238129(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 89.33 % |
Parental protein coverage: | 74.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDRE |
DPKKPKGK.SAYAFF.Q.CREEHKK.NPEVPVNFAEFS..CSERWKTMSGKEKSKFDE.AK.DK..YDR. | |
Retrocopy | DPKKPKGKISAYAFFGQMCREEHKK-NPEVPVNFAEFST*CSERWKTMSGKEKSKFDETAKVDKEHYDRK |
Parental | MKDYGPAKGGKKKKDPNAPK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYI |
MKDYGPAK.GKK.KDPNAPK.RPPSGFFLFCSEFRPKIKSTN.GISIGDVAKKLGEM.NNLNDSEKQPYI | |
Retrocopy | MKDYGPAKSGKKEKDPNAPK<RPPSGFFLFCSEFRPKIKSTNLGISIGDVAKKLGEM*NNLNDSEKQPYI |
Parental | TKAAKLKEKY |
TKAAKLKEKY | |
Retrocopy | TKAAKLKEKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3064 |
Pan troglodytes | retro_ptro_2066 |
Gorilla gorilla | retro_ggor_2104 |
Macaca mulatta | retro_mmul_1957 |