Parental gene:

HMGB3, ENSPPYG00000020818

Aliases:None
Description:high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Organism:Orangutan (Pongo abelii)
Coordinates:X:151035181..151040283(+)


>ENSPPYG00000020818
ATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACA
TAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCG
GGAAAGAAAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCA
GCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCGGAATT
CCGCCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATT
TAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCGGCAAAGCTGAAGGAGAAATATGAGAAGGATGTTGCCGACTAT
AAGTCGAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAAGATGAAGAAGA
GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGGAGGATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 17 .91 RPM
SRP007412_cerebellum 11 .19 RPM
SRP007412_heart 11 .08 RPM
SRP007412_kidney 14 .02 RPM
SRP007412_liver 78 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_one2many 2 retrogenes
retro_btau_190, retro_btau_38,
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2one 2 retrogenes
retro_chof_1891, retro_chof_2010,
Callithrix jacchus ENSCJAG00000003936 ortholog_one2many 9 retrogenes
retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Dipodomys ordii ENSDORG00000010826 ortholog_one2one 4 retrogenes
retro_dord_214, retro_dord_337, retro_dord_454, retro_dord_609,
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Homo sapiens ENSG00000029993 ortholog_one2one 8 retrogenes
retro_hsap_1461, retro_hsap_1873, retro_hsap_2621, retro_hsap_3064, retro_hsap_3683, retro_hsap_4251, retro_hsap_4904, retro_hsap_627,
Gorilla gorilla ENSGGOG00000027164 ortholog_one2one 16 retrogenes
retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Myotis lucifugus ENSMLUG00000010926 possible_ortholog 4 retrogenes
retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta ENSMMUG00000004633 ortholog_one2one 20 retrogenes
retro_mmul_1003, retro_mmul_1115, retro_mmul_1143, retro_mmul_1303, retro_mmul_1341, retro_mmul_1482, retro_mmul_1568, retro_mmul_1624, retro_mmul_1799, retro_mmul_1957, retro_mmul_2106, retro_mmul_2425, retro_mmul_2451, retro_mmul_2469, retro_mmul_2484, retro_mmul_2526, retro_mmul_267, retro_mmul_399, retro_mmul_514, retro_mmul_597,
Monodelphis domestica ENSMODG00000005735 ortholog_one2one 7 retrogenes
retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo ENSMPUG00000011606 ortholog_one2many 2 retrogenes
retro_mputfur_138, retro_mputfur_26,
Mus musculus ENSMUSG00000015217 ortholog_one2many 1 retrogene
retro_mmus_273,
Oryctolagus cuniculus ENSOCUG00000005986 possible_ortholog 7 retrogenes
retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii ENSOGAG00000001773 ortholog_one2many 19 retrogenes
retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Pongo abelii ENSPPYG00000005546 other_paralog 35 retrogenes
retro_pabe_1023, retro_pabe_1125, retro_pabe_1254, retro_pabe_1334, retro_pabe_1500, retro_pabe_159, retro_pabe_1724, retro_pabe_1831, retro_pabe_1973, retro_pabe_1997, retro_pabe_2070, retro_pabe_2089, retro_pabe_2194, retro_pabe_222, retro_pabe_2313, retro_pabe_2362, retro_pabe_2406, retro_pabe_2444, retro_pabe_264, retro_pabe_2732, retro_pabe_2751, retro_pabe_2752, retro_pabe_2777, retro_pabe_2953, retro_pabe_2966, retro_pabe_3008, retro_pabe_3365, retro_pabe_3523, retro_pabe_3684, retro_pabe_3757, retro_pabe_452, retro_pabe_511, retro_pabe_522, retro_pabe_761, retro_pabe_762,
Pongo abelii ENSPPYG00000015204 within_species_paralog 3 retrogenes
retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pan troglodytes ENSPTRG00000022371 ortholog_one2one 22 retrogenes
retro_ptro_1115, retro_ptro_1211, retro_ptro_1276, retro_ptro_1429, retro_ptro_1432, retro_ptro_1561, retro_ptro_174, retro_ptro_1766, retro_ptro_2066, retro_ptro_213, retro_ptro_2218, retro_ptro_2296, retro_ptro_2477, retro_ptro_2497, retro_ptro_2608, retro_ptro_2891, retro_ptro_2944, retro_ptro_3154, retro_ptro_3271, retro_ptro_456, retro_ptro_522, retro_ptro_629,
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2one 1 retrogene
retro_pvam_356,
Rattus norvegicus ENSRNOG00000011096 ortholog_one2many 4 retrogenes
retro_rnor_1049, retro_rnor_2303, retro_rnor_2359, retro_rnor_2363,
Rattus norvegicus ENSRNOG00000050910 ortholog_one2many 5 retrogenes
retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2one 2 retrogenes
retro_shar_139, retro_shar_316,
Sus scrofa ENSSSCG00000012745 ortholog_one2many 3 retrogenes
retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus ENSSTOG00000023908 ortholog_one2many 6 retrogenes
retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,
Tupaia belangeri ENSTBEG00000003068 ortholog_one2one 18 retrogenes
retro_tbel_1002, retro_tbel_1230, retro_tbel_1579, retro_tbel_1700, retro_tbel_1819, retro_tbel_2543, retro_tbel_2730, retro_tbel_3261, retro_tbel_3476, retro_tbel_3623, retro_tbel_3781, retro_tbel_408, retro_tbel_410, retro_tbel_4203, retro_tbel_4209, retro_tbel_4299, retro_tbel_605, retro_tbel_698,
Tursiops truncatus ENSTTRG00000000205 ortholog_one2one 2 retrogenes
retro_ttru_1187, retro_ttru_372,
Vicugna pacos ENSVPAG00000000096 ortholog_one2one 2 retrogenes
retro_vpac_245, retro_vpac_434,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_410 89.74 75.38
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2. retro_pabe_442 81.40 64.32
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3. retro_pabe_560 80.77 88.44
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4. retro_pabe_632 86.24 93.97
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5. retro_pabe_784 67.94 65.83
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6. retro_pabe_1207 82.68 88.44
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7. retro_pabe_1411 75.69 89.95
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8. retro_pabe_1505 88.36 94.47
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9. retro_pabe_1580 84.66 87.44
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10. retro_pabe_1823 82.39 71.36
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11. retro_pabe_1825 87.90 61.81
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12. retro_pabe_1927 86.11 54.27
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13. retro_pabe_2339 63.08 96.48
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14. retro_pabe_2538 89.33 74.87
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15. retro_pabe_2712 80.31 63.32
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16. retro_pabe_2816 79.59 97.99
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17. retro_pabe_3000 81.92 88.44
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18. retro_pabe_3041 77.50 59.30
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19. retro_pabe_3144 87.15 89.95
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20. retro_pabe_3387 88.31 77.39
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21. retro_pabe_3685 85.23 88.44
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22. retro_pabe_3813 85.39 88.94
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Download FASTA sequences of all ENSPPYG00000020818 retrocopies