RetrogeneDB ID: | retro_pabe_3813 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:134406800..134407324(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 85.39 % |
Parental protein coverage: | 88.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKP.GKMSAYAFFVQTCREE.KKK..EVPVNFAEFSKKCS.RWKTMSGKEKSKFDE.AKAD.VR | |
Retrocopy | MAKGDPKKPNGKMSAYAFFVQTCREERKKKYQEVPVNFAEFSKKCSKRWKTMSGKEKSKFDELAKADEVR |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVA-KKLGEMWNNLNDSEK |
YD.EMKDYGPAKGGKKKKD.N..KRPPSGFFLFCSEF.PKIKSTNPGISIGD.A.KK.G....NLNDSEK | |
Retrocopy | YDWEMKDYGPAKGGKKKKDSNTFKRPPSGFFLFCSEFHPKIKSTNPGISIGDMA<KKAG*--DNLNDSEK |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVAR |
.PYITKAAKLKE.YEKDVA.YK.KGKFDGAK.PA.VA. | |
Retrocopy | RPYITKAAKLKEEYEKDVAEYKLKGKFDGAKSPAEVAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .07 RPM | 14 .02 RPM |
SRP007412_liver | 0 .61 RPM | 78 .59 RPM |