RetrogeneDB ID: | retro_pabe_442 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:128834524..128834904(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 81.4 % |
Parental protein coverage: | 64.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKK |
AFFVQ.CREE.KKKNP.VPVNFA.FSKKCSERWKTMSGKEKSKFD.MAKADK..YD.E.KDY.PAKGG.K | |
Retrocopy | AFFVQMCREEPKKKNPVVPVNFA*FSKKCSERWKTMSGKEKSKFDQMAKADKLCYDQEIKDYVPAKGG-K |
Parental | KKDPNAPKRPPSGFFLFCSEF-RPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT |
KKDPNA.KRPPSGF.LFCSEF...KIK.T.P..SIGD.AKKL.EMWNNLNDSEK.PY.T | |
Retrocopy | KKDPNAHKRPPSGFLLFCSEF<LHKIKFTKPDVSIGDAAKKLDEMWNNLNDSEKEPYLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .09 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .07 RPM | 14 .02 RPM |
SRP007412_liver | 0 .03 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_193 |
Pan troglodytes | retro_ptro_174 |
Macaca mulatta | retro_mmul_399 |