RetrogeneDB ID: | retro_pabe_1207 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:105051757..105052276(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 82.68 % |
Parental protein coverage: | 88.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHK-KKNPEVPVNFAEFSKKCSERWKTMSGK-EKSKFDEMAKADK |
MAK.DPKKPK.KMSAYAFFVQ.CRE.H..KKNPEVPVNFAEFSKK.SER.KTM.GK.EKSK.DE.AKADK | |
Retrocopy | MAKRDPKKPKDKMSAYAFFVQMCREGHR<KKNPEVPVNFAEFSKKSSERCKTM-GK<EKSKSDEIAKADK |
Parental | VRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVA-KKLGEMWNNLNDS |
V.YD.EM.D..PAKGG.KKK.PN.PK.P.S..FLFCSEF.PK.KSTNPGIS.GDVA.KKLGEMWNNLNDS | |
Retrocopy | VCYDWEMEDNRPAKGG-KKKFPNVPKSPSSVLFLFCSEFLPKTKSTNPGISTGDVA<KKLGEMWNNLNDS |
Parental | EKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
EKQPYITKAAKLK.KYEKDVAD.KSKGKFD.AKGPAKVA | |
Retrocopy | EKQPYITKAAKLKKKYEKDVADFKSKGKFDDAKGPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .12 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1461 |