RetrogeneDB ID: | retro_pabe_3144 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:57497999..57498533(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 87.15 % |
Parental protein coverage: | 89.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MA.GDPKKPKGKMSAYAF.VQTCREEHKKKNPEVPVNFAEFSK.CSER.KTMSGK..SKFDE..KADKVR | |
Retrocopy | MANGDPKKPKGKMSAYAFHVQTCREEHKKKNPEVPVNFAEFSKTCSER*KTMSGKD-SKFDEITKADKVR |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQ |
YD.EMKDYGPAKG.KKKKDPNA.KRP.SGFFLFCSE..PKIKSTNP.ISI.D.AKKLGEMWNNLNDSEK. | |
Retrocopy | YDQEMKDYGPAKGAKKKKDPNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKR |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKK |
PYITKAAKLKEK.EKDVADYKSKGKFDG..GPA.VA.KK | |
Retrocopy | PYITKAAKLKEK*EKDVADYKSKGKFDGTEGPANVAWKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .21 RPM | 78 .59 RPM |