RetrogeneDB ID: | retro_pabe_632 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:115881772..115882327(-) | ||
Located in intron of: | ENSPPYG00000002680 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 86.24 % |
Parental protein coverage: | 93.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA-KADKV |
MAKGDP.KPKGKMSAY.FFVQTCREEHKKKNPEVPVN.AEFSKKCSERWK.MSGKEKSKFDEMA.K.D.. | |
Retrocopy | MAKGDPRKPKGKMSAYTFFVQTCREEHKKKNPEVPVNCAEFSKKCSERWKIMSGKEKSKFDEMA<KGD*M |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSE- |
R.D.EMKDYGPAKGG.KKKDPNAPKRPPSGF.L.C.EF...IKSTNPGISIGDVAKKLGEMWNNLNDSE. | |
Retrocopy | RCDWEMKDYGPAKGG-KKKDPNAPKRPPSGFLLLCLEFCA*IKSTNPGISIGDVAKKLGEMWNNLNDSE> |
Parental | KQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEE |
KQPYITK..KLK.KYEKDVADYKSK.KFDGAK.PAK.ARKKV.EEDEE. | |
Retrocopy | KQPYITKVEKLK-KYEKDVADYKSKVKFDGAKRPAKFARKKVVEEDEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_734 |
Pan troglodytes | retro_ptro_522 |
Macaca mulatta | retro_mmul_2469 |