RetrogeneDB ID: | retro_pabe_1411 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16_random:8008795..8009318(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 75.69 % |
Parental protein coverage: | 89.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD |
K..PKKPK..MSAYAFF.Q.CREE.KKKNPEV.VNF.E.SKKCSER.KTM.GKEKSK.DEM...D...YD | |
Retrocopy | KMTPKKPKREMSAYAFFMQICREERKKKNPEVLVNFTEISKKCSERRKTMRGKEKSKPDEMTEVDEILYD |
Parental | REMKDYGPAKGGKKKKDPNA-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP |
.E.KDYGPAKGGKKK.DP.A.PKR.PSGFFLFCSEF.PK.KSTNPGISIGDVAK.L.E.WNNL.DS.K.P | |
Retrocopy | WEIKDYGPAKGGKKK-DPKA<PKRLPSGFFLFCSEFCPKDKSTNPGISIGDVAKRLSEIWNNLSDSAKLP |
Parental | YITKAA-KLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVE |
.ITKAA.KLK.K.EK.VAD.KSKGKFDGAK...KVA.KKV. | |
Retrocopy | DITKAA<KLK-KCEKGVADSKSKGKFDGAK--VKVAWKKVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |