RetrogeneDB ID: | retro_pabe_1825 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:33322786..33323154(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 87.9 % |
Parental protein coverage: | 61.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
..KGD.KKPKGKMSAYAFFVQ.CREEHKKKNPEV.VNFAE.SKKC.ER.KTMSGKEKSKFDEMAKADKV. | |
Retrocopy | VGKGDTKKPKGKMSAYAFFVQMCREEHKKKNPEVLVNFAEYSKKCPER*KTMSGKEKSKFDEMAKADKVH |
Parental | YDREMKDYGPAKGGKKKKDPNA-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDV |
YDREMKDYGPAK.GKKKKDPNA.PKR..SGFFLFCSEF.P.IKSTNPGISIGDV | |
Retrocopy | YDREMKDYGPAKEGKKKKDPNA<PKRLLSGFFLFCSEFCPEIKSTNPGISIGDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .03 RPM | 78 .59 RPM |