RetrogeneDB ID: | retro_pabe_410 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:86963578..86964022(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 89.74 % |
Parental protein coverage: | 75.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | KKNPEVPVN-FAEFSK-KCSERWKT-MSGKE-KSKFDEM-AKADKVRYDREMKDYGPAKGGKKKKDPNAP |
.KNP.VPVN.F.EFSK..C.ERWKT.MSGK...SKFDEM.AKADKVRYDREMKDYGPAKGGKKKKDPNAP | |
Retrocopy | RKNPRVPVN<FVEFSK<ECFERWKT<MSGKQ<ESKFDEM<AKADKVRYDREMKDYGPAKGGKKKKDPNAP |
Parental | KRPPSGFF-LFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKS |
KRPPSGFF.LFCSEFRPKIKSTN.GISIGDVAKKLGEMWN.L.DSEKQPYITKAAKLKEKYEKDVADYKS | |
Retrocopy | KRPPSGFF<LFCSEFRPKIKSTNRGISIGDVAKKLGEMWNTLTDSEKQPYITKAAKLKEKYEKDVADYKS |
Parental | KGKFDGAKGPAKVARK |
KGKFDGAKGPAKVARK | |
Retrocopy | KGKFDGAKGPAKVARK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_248 |
Pan troglodytes | retro_ptro_213 |
Gorilla gorilla | retro_ggor_301 |