RetrogeneDB ID: | retro_pabe_2816 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5_random:12750333..12750905(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 79.59 % |
Parental protein coverage: | 97.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPKGKMSAY.FFV........K.....PVNFAEFSKKCSERWKTMSGKEKSK.DEMAK.DKV. | |
Retrocopy | MAKGDPKKPKGKMSAYVFFVADVQRRM*KR--KTPVNFAEFSKKCSERWKTMSGKEKSKCDEMAKTDKVH |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQ |
.DREMK..GPAKG.KKKKDP.APKRPP.GFFLF.SEFRPKIKSTNPGIS.GDVAKK.G..WNNLNDSEK. | |
Retrocopy | CDREMK--GPAKGSKKKKDPSAPKRPPTGFFLFSSEFRPKIKSTNPGISVGDVAKKAG*DWNNLNDSEK* |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEE-EEEEEE |
PYIT.A.KLK.KYEKDVADYKSKGKFDGAK.PAK.A.KKVEEEDE..EE..EEE.E | |
Retrocopy | PYITEAVKLKKKYEKDVADYKSKGKFDGAKRPAKIAWKKVEEEDEDDEE<DEEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .12 RPM | 11 .19 RPM |
SRP007412_heart | 0 .21 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .20 RPM | 14 .02 RPM |
SRP007412_liver | 0 .12 RPM | 78 .59 RPM |