RetrogeneDB ID: | retro_pabe_560 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:109780122..109780660(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 80.77 % |
Parental protein coverage: | 88.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAKGDPKKPKGKMSAYAF-FVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV |
MAK..P.KPK.KMSA.AF.FV.TCREEHKKKNPEVPVNF.EFSKKCSE.WKTM.GKEKSKFDEMAK.DKV | |
Retrocopy | MAKDYPTKPKSKMSASAF<FV*TCREEHKKKNPEVPVNFVEFSKKCSEGWKTMYGKEKSKFDEMAKVDKV |
Parental | RYDREMKDY-GPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV---AKKLGEMWNNLN |
.YD.E.KDY.GPAKGGKKKKDPNAPK.PPSGFFLFCSEFR.KIKSTN..ISIGDV......L.E...NLN | |
Retrocopy | HYDQEKKDY>GPAKGGKKKKDPNAPKMPPSGFFLFCSEFRSKIKSTNASISIGDVXXXXXXLSET*SNLN |
Parental | DSEKQPYITKAAKLKEKYEKDVAD-YKSKGKFDGAKGPAKVA |
DSEKQPYIT.AAKLKEKY.KDVAD..KSKGKFD.AK.PAKVA | |
Retrocopy | DSEKQPYITQAAKLKEKYDKDVAD>LKSKGKFDDAKCPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_627 |
Pan troglodytes | retro_ptro_456 |
Gorilla gorilla | retro_ggor_549 |
Macaca mulatta | retro_mmul_2425 |