RetrogeneDB ID: | retro_pabe_2712 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:182307472..182307836(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000016125 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 80.31 % |
Parental protein coverage: | 63.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKG-KMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV |
MAKGDPKKPKG.KMSAY.FFVQTCREE.KKKN...PVNFAEFSKKCSERWKTMSGKEKSK.DEMAK.DKV | |
Retrocopy | MAKGDPKKPKG>KMSAYVFFVQTCREECKKKN---PVNFAEFSKKCSERWKTMSGKEKSKCDEMAKTDKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKK |
..DREMK..GPAKG.KKKKDP.APKRPP.GFFLF.SEFRPKIKST.P..S......K | |
Retrocopy | HCDREMK--GPAKGSKKKKDPSAPKRPPTGFFLFSSEFRPKIKSTKPSASLLEMWRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .12 RPM | 11 .19 RPM |
SRP007412_heart | 0 .03 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .03 RPM | 14 .02 RPM |
SRP007412_liver | 0 .03 RPM | 78 .59 RPM |