RetrogeneDB ID: | retro_cfam_804 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:36091651..36091997(+) | ||
Located in intron of: | ENSCAFG00000007521 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSCAFG00000016832 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.23 % |
Parental protein coverage: | 63.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLE-PERIIGATDSSGELMFLM |
..SQKTAHETD....GK.KA.S.SED.G.ESKPK.KK....K......G.E.PERII...DSSG.LM.LM | |
Retrocopy | ISSQKTAHETD-NQ*GKHKAESGSEDRGMESKPKQKK--NQKSQRLCLGFE>PERIIDTIDSSG*LMSLM |
Parental | KWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
KWKNSDE.DLV...EANVKCPQVV..FYEE.LTW..YP.EDDDKKDDKN | |
Retrocopy | KWKNSDEPDLVLDTEANVKCPQVVMYFYEETLTWYCYPLEDDDKKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 37 .00 RPM |
SRP017611_brain | 0 .00 RPM | 13 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .59 RPM |
SRP017611_liver | 0 .00 RPM | 2 .90 RPM |