RetrogeneDB ID: | retro_cpor_1421 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:56992549..56992974(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSCPOG00000001315 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.78 % |
Parental protein coverage: | 98.62 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | KFNPFVTSDRSKNRKRHFNAPSHIRRKIM-SSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
KF..F..S..SKN..RHF.AP....RK...SS.LSKELR.KY.V..MPI.KDDEVQ.V.GH.KGQQ.G.V | |
Retrocopy | KFSSFMISGISKNHRRHFDAPAYNGRKLI<SSYLSKELR*KYVVPFMPI*KDDEVQIV*GHCKGQQMGIV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
...Y............R.KANGT..HV.IH.......RLK.DKD..KIL..K.K...V.K.K.KYK.ETI | |
Retrocopy | QVLYQQTHHLCWMGLWR-KANGTVCHVSIHSREMLTSRLKVDKDYEKILKVKIKLF*VRK*KWKYKQETI |
Parental | EKMQ |
..MQ | |
Retrocopy | KEMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 192 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .68 RPM |
SRP017611_liver | 0 .00 RPM | 156 .48 RPM |
SRP040447_lung | 0 .00 RPM | 355 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 353 .86 RPM |