RetrogeneDB ID: | retro_cpor_1526 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_93:5695745..5696144(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSCPOG00000001315 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.85 % |
Parental protein coverage: | 91.72 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | NPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQ-IGKVVQ |
NPFVTSD.SKN.K.HF.APS....KI.SSPL.KEL.QKYN..SMPI.KDDEVQVV.GHYK.QQ.I...VQ | |
Retrocopy | NPFVTSDHSKNQKWHFKAPSSLH*KITSSPLLKELWQKYNNHSMPICKDDEVQVV*GHYKRQQ>ISRAVQ |
Parental | VYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDR-KKILERKAKSRQVGKEKGKYK |
VYRKKYVI....VQR.KA.GTT.HVGIHP.K.VITRLKLDKDR.KKI.E.K.KS.QVGKE....K | |
Retrocopy | VYRKKYVIFSQ*VQRKKADGTTIHVGIHPKKEVITRLKLDKDR<KKIIECKPKSQQVGKEANAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 192 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .68 RPM |
SRP017611_liver | 0 .00 RPM | 156 .48 RPM |
SRP040447_lung | 0 .03 RPM | 355 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 353 .86 RPM |