RetrogeneDB ID: | retro_cpor_1503 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:48405945..48406308(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSCPOG00000001315 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.26 % |
Parental protein coverage: | 85.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
M.FNPFVT.DR.KNRKRHFNAPSHI.RKIMSSPLSK.LRQK.NVRSMP.RKDDEVQ.V.GHY..QQIGKV | |
Retrocopy | MRFNPFVTLDRTKNRKRHFNAPSHIHRKIMSSPLSK*LRQKNNVRSMPSRKDDEVQIV*GHYRCQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAK |
..VYRKKY...IE.VQ.EKANGT.VHVGIHPSKVV.TRLKLDKDRKKILE.KA. | |
Retrocopy | IHVYRKKY---IEQVQGEKANGTAVHVGIHPSKVVTTRLKLDKDRKKILEWKAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 192 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .68 RPM |
SRP017611_liver | 0 .17 RPM | 156 .48 RPM |
SRP040447_lung | 0 .50 RPM | 355 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 353 .86 RPM |