RetrogeneDB ID: | retro_cpor_585 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:49504411..49504758(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000020604 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSCPOG00000001315 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.17 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSSPLSKELRQKYNVRSMPI-RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERV-QREKA-NGTTVH |
.SSPLSKEL.QKY.VRSMPI..KD.EVQVV.G..KGQQ.GKVV..Y..KYVI..ERV.Q...A..GT.V. | |
Retrocopy | LSSPLSKELKQKYKVRSMPI<LKDNEVQVVQGYSKGQQVGKVVPGYQEKYVINTERVQQEKAA>HGTAVY |
Parental | VGIHPSKVVITRLKLDKDRK-KILERKAKSRQVGKEKGKYKEETIEKMQE |
VGIHPSKVVIT.LKLDKD.K.KILE.K....Q.GKEK.K..EETI.KMQE | |
Retrocopy | VGIHPSKVVITGLKLDKDCK<KILEQK-PNHQAGKEKSKFNEETIQKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 192 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .68 RPM |
SRP017611_liver | 0 .00 RPM | 156 .48 RPM |
SRP040447_lung | 0 .05 RPM | 355 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 353 .86 RPM |