Parental gene:

RPL26, ENSCPOG00000001315

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_61:7433558..7438301(-)


>ENSCPOG00000001315
ATGAAGTTCAATCCTTTTGTGACTTCGGACCGAAGCAAGAACCGCAAAAGGCATTTCAATGCACCGTCGCACATTCGCAG
GAAGATTATGTCCTCCCCTCTTTCCAAAGAGCTGAGACAGAAATACAATGTTCGATCTATGCCCATCCGAAAGGATGATG
AGGTTCAGGTTGTGCGAGGACACTATAAAGGTCAGCAGATTGGCAAAGTGGTCCAGGTTTACAGGAAGAAGTACGTCATC
TACATCGAACGGGTGCAGCGGGAGAAGGCAAATGGCACAACTGTCCATGTGGGCATTCACCCCAGCAAGGTGGTCATCAC
CAGGCTAAAACTGGACAAAGACCGCAAAAAGATCCTGGAACGGAAAGCCAAGTCTCGCCAAGTAGGAAAGGAAAAGGGCA
AATACAAGGAGGAGACCATTGAGAAGATGCAGGAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 156 .48 RPM
SRP017611_kidney 220 .68 RPM
SRP017611_brain 192 .45 RPM
SRP040447_lung 355 .56 RPM
SRP040447_skeletal_muscle 353 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
retro_amel_1175, retro_amel_1535, retro_amel_1885, retro_amel_1934, retro_amel_360, retro_amel_499, retro_amel_900,
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
retro_btau_1090, retro_btau_230,
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Homo sapiens ENSG00000161970 ortholog_one2one 27 retrogenes
retro_hsap_1137, retro_hsap_1309, retro_hsap_1376, retro_hsap_1394, retro_hsap_191, retro_hsap_2108, retro_hsap_2165, retro_hsap_2253, retro_hsap_253, retro_hsap_267, retro_hsap_2946, retro_hsap_3118, retro_hsap_3260, retro_hsap_3324, retro_hsap_3490, retro_hsap_3700, retro_hsap_3803, retro_hsap_3813, retro_hsap_3914, retro_hsap_4043, retro_hsap_4061, retro_hsap_4874, retro_hsap_4932, retro_hsap_642, retro_hsap_691, retro_hsap_915, retro_hsap_998,
Gorilla gorilla ENSGGOG00000023944 possible_ortholog 4 retrogenes
retro_ggor_2565, retro_ggor_270, retro_ggor_51, retro_ggor_974,
Macropus eugenii ENSMEUG00000009891 ortholog_one2one 7 retrogenes
retro_meug_1239, retro_meug_1538, retro_meug_1607, retro_meug_1827, retro_meug_262, retro_meug_322, retro_meug_534,
Myotis lucifugus ENSMLUG00000002176 ortholog_one2many 1 retrogene
retro_mluc_232,
Macaca mulatta ENSMMUG00000003448 possible_ortholog 22 retrogenes
retro_mmul_1117, retro_mmul_1361, retro_mmul_1398, retro_mmul_1497, retro_mmul_1710, retro_mmul_1773, retro_mmul_1899, retro_mmul_1986, retro_mmul_2052, retro_mmul_2163, retro_mmul_2332, retro_mmul_2344, retro_mmul_325, retro_mmul_360, retro_mmul_398, retro_mmul_405, retro_mmul_448, retro_mmul_548, retro_mmul_805, retro_mmul_903, retro_mmul_920, retro_mmul_992,
Monodelphis domestica ENSMODG00000006201 possible_ortholog 2 retrogenes
retro_mdom_36, retro_mdom_64,
Nomascus leucogenys ENSNLEG00000009981 possible_ortholog 1 retrogene
retro_nleu_76,
Otolemur garnettii ENSOGAG00000017070 ortholog_one2one 3 retrogenes
retro_ogar_118, retro_ogar_255, retro_ogar_66,
Pan troglodytes ENSPTRG00000008742 possible_ortholog 3 retrogenes
retro_ptro_1546, retro_ptro_2510, retro_ptro_73,
Rattus norvegicus ENSRNOG00000004214 possible_ortholog 3 retrogenes
retro_rnor_213, retro_rnor_260, retro_rnor_273,
Sarcophilus harrisii ENSSHAG00000006890 possible_ortholog 1 retrogene
retro_shar_458,
Sus scrofa ENSSSCG00000028850 possible_ortholog 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,
Ictidomys tridecemlineatus ENSSTOG00000021923 ortholog_one2one 6 retrogenes
retro_itri_1113, retro_itri_1145, retro_itri_1206, retro_itri_1262, retro_itri_1670, retro_itri_811,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_167 85.61 90.34
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2. retro_cpor_522 64.62 88.97
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3. retro_cpor_585 69.17 80.00
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4. retro_cpor_858 58.20 82.76
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5. retro_cpor_1009 63.27 66.90
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6. retro_cpor_1161 56.76 99.31
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7. retro_cpor_1346 75.34 100.00
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8. retro_cpor_1421 52.78 98.62
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9. retro_cpor_1503 82.26 85.52
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10. retro_cpor_1526 71.85 91.72
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Download FASTA sequences of all ENSCPOG00000001315 retrocopies