RetrogeneDB ID: | retro_cpor_858 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:39769961..39770318(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSCPOG00000001315 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.2 % |
Parental protein coverage: | 82.76 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | SDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK-VVQVYRK- |
SD.S....RHF..PS.I.RKI...P.SK.LR.K.N..S..I.KDD..QV..G.Y...Q.GK...QVY.K. | |
Retrocopy | SDCSRKQNRHFYVPSFIHRKITCVPFSK*LREKHNI*STSIQKDDKAQVA*GCYEDPQVGK>IDQVYKK< |
Parental | KYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQV |
KY.I..E.V..EKANGTTV.VGIHP..VVITRLKLD.D.K..L..KAKS.QV | |
Retrocopy | KYGIGSE*V*-EKANGTTVCVGIHPHTVVITRLKLDLDQKRPLKCKAKSSQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 192 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .68 RPM |
SRP017611_liver | 0 .00 RPM | 156 .48 RPM |
SRP040447_lung | 0 .00 RPM | 355 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 353 .86 RPM |