RetrogeneDB ID: | retro_hsap_276 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:192685312..192685780(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000231767 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSG00000143947 | ||
Aliases: | RPS27A, CEP80, HEL112, S27A, UBA80, UBC, UBCEP1, UBCEP80 | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 95.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTL.GKTITLEVE.SDTI.NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | |
Retrocopy | MQIFVKTLMGKTITLEVELSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHY |
LRLRGGAKKRKKKSYTTP.KNKHKRKKVKLA.LKYYKVDENGKIS.L.RECPSDECGAGVFMASHFDRHY | |
Retrocopy | LRLRGGAKKRKKKSYTTPRKNKHKRKKVKLALLKYYKVDENGKISCLHRECPSDECGAGVFMASHFDRHY |
Parental | CGKCCLTYCFNKPEDK |
CGKCCLTYCFNKPEDK | |
Retrocopy | CGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .32 RPM | 241 .34 RPM |
bodymap2_adrenal | 0 .55 RPM | 445 .31 RPM |
bodymap2_brain | 0 .16 RPM | 168 .49 RPM |
bodymap2_breast | 0 .27 RPM | 255 .72 RPM |
bodymap2_colon | 0 .50 RPM | 539 .62 RPM |
bodymap2_heart | 0 .07 RPM | 135 .97 RPM |
bodymap2_kidney | 0 .23 RPM | 283 .70 RPM |
bodymap2_liver | 0 .06 RPM | 197 .57 RPM |
bodymap2_lung | 0 .37 RPM | 575 .35 RPM |
bodymap2_lymph_node | 0 .11 RPM | 651 .95 RPM |
bodymap2_ovary | 0 .67 RPM | 554 .21 RPM |
bodymap2_prostate | 0 .24 RPM | 709 .26 RPM |
bodymap2_skeletal_muscle | 0 .11 RPM | 147 .09 RPM |
bodymap2_testis | 0 .23 RPM | 329 .65 RPM |
bodymap2_thyroid | 0 .38 RPM | 244 .64 RPM |
bodymap2_white_blood_cells | 0 .61 RPM | 847 .09 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_87138 | 418 libraries | 639 libraries | 743 libraries | 28 libraries | 1 library |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .93 RPM |
CEU_NA11843 | 1 .91 RPM |
CEU_NA11930 | 3 .03 RPM |
CEU_NA12004 | 0 .80 RPM |
CEU_NA12400 | 1 .68 RPM |
CEU_NA12751 | 1 .31 RPM |
CEU_NA12760 | 2 .38 RPM |
CEU_NA12827 | 2 .17 RPM |
CEU_NA12872 | 1 .31 RPM |
CEU_NA12873 | 1 .72 RPM |
FIN_HG00183 | 2 .11 RPM |
FIN_HG00277 | 2 .26 RPM |
FIN_HG00315 | 1 .55 RPM |
FIN_HG00321 | 1 .36 RPM |
FIN_HG00328 | 0 .99 RPM |
FIN_HG00338 | 1 .68 RPM |
FIN_HG00349 | 1 .91 RPM |
FIN_HG00375 | 1 .17 RPM |
FIN_HG00377 | 1 .61 RPM |
FIN_HG00378 | 1 .00 RPM |
GBR_HG00099 | 1 .19 RPM |
GBR_HG00111 | 1 .87 RPM |
GBR_HG00114 | 1 .39 RPM |
GBR_HG00119 | 1 .56 RPM |
GBR_HG00131 | 1 .87 RPM |
GBR_HG00133 | 1 .40 RPM |
GBR_HG00134 | 0 .79 RPM |
GBR_HG00137 | 1 .40 RPM |
GBR_HG00142 | 1 .44 RPM |
GBR_HG00143 | 1 .85 RPM |
TSI_NA20512 | 1 .64 RPM |
TSI_NA20513 | 1 .23 RPM |
TSI_NA20518 | 1 .75 RPM |
TSI_NA20532 | 2 .24 RPM |
TSI_NA20538 | 1 .89 RPM |
TSI_NA20756 | 1 .77 RPM |
TSI_NA20765 | 1 .06 RPM |
TSI_NA20771 | 2 .47 RPM |
TSI_NA20786 | 0 .99 RPM |
TSI_NA20798 | 1 .03 RPM |
YRI_NA18870 | 1 .05 RPM |
YRI_NA18907 | 0 .59 RPM |
YRI_NA18916 | 1 .37 RPM |
YRI_NA19093 | 0 .86 RPM |
YRI_NA19099 | 1 .30 RPM |
YRI_NA19114 | 1 .34 RPM |
YRI_NA19118 | 1 .55 RPM |
YRI_NA19213 | 0 .96 RPM |
YRI_NA19214 | 0 .89 RPM |
YRI_NA19223 | 1 .37 RPM |