RetrogeneDB ID: | retro_fcat_1542 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:36253841..36254304(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022922 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSFCAG00000023939 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 77.22 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVK-AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL |
M.I.V.TL..KTITLEVEPSDTI.NVK.AKIQ.KE.IPP.QQRLI.AG.QLEDG..L.DYNIQKES.LH. | |
Retrocopy | M*ISVETLRVKTITLEVEPSDTIGNVK>AKIQAKEEIPPVQQRLILAGRQLEDGHPLTDYNIQKESVLHR |
Parental | VLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKV-DENGKISRLRRECPSDECGAGVFMASHFDR |
VLRLRGGAKKRKK.SY.TPKKNKH.RKK.KLAVLKYYKV.D..G.I.R..RE.PSDE.GAGVFMA.H.DR | |
Retrocopy | VLRLRGGAKKRKK-SYATPKKNKHERKKAKLAVLKYYKV>DKYGQIGRRCRERPSDERGAGVFMAGHSDR |
Parental | HYCGKCCLT-YCFNKPED |
.YCGK.CLT..CFNKPED | |
Retrocopy | RYCGKRCLT<QCFNKPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 112 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 654 .11 RPM |
SRP017611_liver | 0 .00 RPM | 289 .32 RPM |