Parental gene:

RPS27A, ENSSSCG00000022357

Aliases:None
Description:ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]
Organism:Pig (Sus scrofa)
Coordinates:3:90773816..90776397(-)


>ENSSSCG00000022357
ATGCAGATATTCGTGAAGACGCTGACGGGCAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAA
GGCTAAGATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAC
GTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTATTGAGACTTCGTGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTAAAATACTATAA
GGTGGATGAGAACGGCAAAATCAGTCGTCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCA
GCCACTTTGACAGACATTATTGTGGCAAATGTTGCCTGACCTATTGTTTCAACAAACCAGAAGACAAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 284 .58 RPM
SRP014902_testis 884 .89 RPM
SRP018288_heart 447 .20 RPM
SRP018288_kidney 497 .06 RPM
SRP018288_liver 388 .10 RPM
SRP018288_lung 103 .35 RPM
SRP018856_adipose 506 .66 RPM
SRP035408_brain 503 .50 RPM
SRP035408_liver 403 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004017 ortholog_one2one 5 retrogenes
retro_amel_1565, retro_amel_175, retro_amel_598, retro_amel_661, retro_amel_844,
Canis familiaris ENSCAFG00000023471 possible_ortholog 3 retrogenes
retro_cfam_1048, retro_cfam_640, retro_cfam_81,
Callithrix jacchus ENSCJAG00000010052 possible_ortholog 5 retrogenes
retro_cjac_200, retro_cjac_229, retro_cjac_344, retro_cjac_74, retro_cjac_88,
Felis catus ENSFCAG00000023939 ortholog_one2one 1 retrogene
retro_fcat_1542,
Homo sapiens ENSG00000143947 ortholog_one2one 10 retrogenes
retro_hsap_1694, retro_hsap_1715, retro_hsap_2217, retro_hsap_2416, retro_hsap_276, retro_hsap_3344, retro_hsap_3508, retro_hsap_4272, retro_hsap_4649, retro_hsap_4650,
Gorilla gorilla ENSGGOG00000007678 ortholog_one2one 9 retrogenes
retro_ggor_1290, retro_ggor_1291, retro_ggor_1502, retro_ggor_1749, retro_ggor_179, retro_ggor_203, retro_ggor_2373, retro_ggor_2858, retro_ggor_2885,
Loxodonta africana ENSLAFG00000023133 possible_ortholog 2 retrogenes
retro_lafr_1122, retro_lafr_185,
Macropus eugenii ENSMEUG00000008917 ortholog_one2one 13 retrogenes
retro_meug_107, retro_meug_1184, retro_meug_1460, retro_meug_1514, retro_meug_1544, retro_meug_1657, retro_meug_183, retro_meug_1866, retro_meug_209, retro_meug_521, retro_meug_594, retro_meug_937, retro_meug_94,
Myotis lucifugus ENSMLUG00000017064 possible_ortholog 10 retrogenes
retro_mluc_1201, retro_mluc_1255, retro_mluc_1298, retro_mluc_1646, retro_mluc_1730, retro_mluc_1865, retro_mluc_1867, retro_mluc_2264, retro_mluc_37, retro_mluc_380,
Myotis lucifugus ENSMLUG00000029449 possible_ortholog 1 retrogene
retro_mluc_1585,
Macaca mulatta ENSMMUG00000015563 ortholog_one2one 8 retrogenes
retro_mmul_1198, retro_mmul_193, retro_mmul_2189, retro_mmul_222, retro_mmul_2470, retro_mmul_282, retro_mmul_606, retro_mmul_73,
Monodelphis domestica ENSMODG00000001819 possible_ortholog 3 retrogenes
retro_mdom_1367, retro_mdom_1751, retro_mdom_205,
Mustela putorius furo ENSMPUG00000010468 ortholog_one2one 6 retrogenes
retro_mputfur_1512, retro_mputfur_242, retro_mputfur_319, retro_mputfur_332, retro_mputfur_499, retro_mputfur_777,
Oryctolagus cuniculus ENSOCUG00000003613 possible_ortholog 10 retrogenes
retro_ocun_1087, retro_ocun_1163, retro_ocun_1209, retro_ocun_1259, retro_ocun_1268, retro_ocun_1339, retro_ocun_164, retro_ocun_288, retro_ocun_381, retro_ocun_851,
Pongo abelii ENSPPYG00000025871 possible_ortholog 1 retrogene
retro_pabe_117,
Pan troglodytes ENSPTRG00000011928 possible_ortholog 1 retrogene
retro_ptro_32,
Rattus norvegicus ENSRNOG00000004426 possible_ortholog 2 retrogenes
retro_rnor_117, retro_rnor_161,
Ictidomys tridecemlineatus ENSSTOG00000009566 possible_ortholog 5 retrogenes
retro_itri_1583, retro_itri_1765, retro_itri_26, retro_itri_635, retro_itri_962,
Tursiops truncatus ENSTTRG00000013947 ortholog_one2one 5 retrogenes
retro_ttru_1199, retro_ttru_1279, retro_ttru_533, retro_ttru_705, retro_ttru_838,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_145 91.37 87.82
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Download FASTA sequences of all ENSSSCG00000022357 retrocopies