RetrogeneDB ID: | retro_pvam_487 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_343:151355..151872(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPVAG00000015225 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 76. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEG-IHVLDWP |
M..MN.PAPVEVTY.NMRFLI.HNPT.ATLNKFIEELKKY..TTIV.V.EATYDT.LVEKE..I.VLDW. | |
Retrocopy | MVPMNHPAPVEVTYRNMRFLIAHNPTSATLNKFIEELKKYDITTIVKVYEATYDTALVEKEA<IQVLDWL |
Parental | FDDGAPPSNQIVDDWLSL-VKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRR |
F..G..PSNQIVDDWL.L.V..KFREEPGCCIAV.CV.GLGR.P.LVALA.I.GGMK.ED.V.FI.QKR. | |
Retrocopy | FNNGSSPSNQIVDDWLNL<VNVKFREEPGCCIAVYCVVGLGRTPMLVALAVIKGGMKNEDVVPFI*QKRC |
Parental | GAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCVQ |
G.FNSKQLLYLEKYR.KM.L.FKD..GHRN.CC.Q | |
Retrocopy | GTFNSKQLLYLEKYRSKMQLHFKDTSGHRNKCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002275 | 3 retrocopies | |
Equus caballus | ENSECAG00000022483 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000008183 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000007183 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006572 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000001162 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018701 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000440 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000016743 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015225 | 2 retrocopies |
retro_pvam_487 , retro_pvam_848,
|
Rattus norvegicus | ENSRNOG00000011771 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046370 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000009956 | 14 retrocopies | |
Tursiops truncatus | ENSTTRG00000004129 | 6 retrocopies |