RetrogeneDB ID: | retro_nleu_1111 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397281.1:24807481..24807992(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSNLEG00000000440 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTALVEKEGIHVLDWPF |
MAR.N.PA.V...YKN.RFLITHNPTN...N.F..ELK..GVTTIVRV.EATY..AL.EKE.I.V.DWPF | |
Retrocopy | MARTNLPASVDIAYKNVRFLITHNPTNTYFNRFLKELKQNGVTTIVRV*EATYNIALLEKESIQVPDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPV-LVALALIEGGMKYEDAVQFIRQKRRG |
DDG..PS.QI.D.WL.L.K.KFRE.PGCCIA.HCV.G.GRAPV.LVALALIEGGM.YE..VQFIR.K..G | |
Retrocopy | DDGTAPSSQIIDNWLKLMKNKFREDPGCCIAIHCVVGFGRAPV>LVALALIEGGMTYEVVVQFIR*K*HG |
Parental | AFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
AFNSKQLLYLEKY..K..L........RNNC..Q | |
Retrocopy | AFNSKQLLYLEKYCLKICLHLRNP---RNNCFLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |